PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 308aa    MW: 34513.6 Da    PI: 7.9521
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616160.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+ ++ ++G g+W++ +++ g++R++k+c++rw +yl
   XP_013616160.1 14 KGPWTSEEDQKLLAYIDEHGYGSWRSLPEKAGLHRCGKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding513.3e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++  +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
   XP_013616160.1  67 RGKFNLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112
                      899*******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.622961IPR017930Myb domain
SuperFamilySSF466895.29E-3010108IPR009057Homeodomain-like
SMARTSM007178.7E-131363IPR001005SANT/Myb domain
PfamPF002494.5E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-231568IPR009057Homeodomain-like
CDDcd001678.21E-101661No hitNo description
PROSITE profilePS5129425.2562116IPR017930Myb domain
SMARTSM007173.9E-1666114IPR001005SANT/Myb domain
PfamPF002492.3E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-2669117IPR009057Homeodomain-like
CDDcd001677.77E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRSPCWDKM GLKKGPWTSE EDQKLLAYID EHGYGSWRSL PEKAGLHRCG KSCRLRWTNY  60
LRPDIKRGKF NLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLVKMG  120
IDPVTHKPKN ATPLSSLGGI SKNAATLSHM AQWESARLEA EARLARESKL LHYQTKVSSS  180
HHDHLNIISS DQQKQKQLES PTSTVSFSET KTEFVGSSST CLNMIKEAEN DWISSTIQEF  240
EGVKEGLTGL LLGGDSIGRS FSADKNETAG ESSSGGGDCN NYYEDNKSYL DSIFSFVDPS  300
PSDSTPMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667340.0KC966734.1 Brassica napus MYB transcription factor 16 (MYB16.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013663576.10.0PREDICTED: transcription factor MYB34-like
RefseqXP_013663575.10.0PREDICTED: transcription factor MYB34-like
RefseqXP_013616161.10.0PREDICTED: transcription factor MYB34-like
RefseqXP_013616160.10.0PREDICTED: transcription factor MYB34-like
SwissprotQ8GWP08e-69MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A078DUW40.0A0A078DUW4_BRANA; BnaC02g05990D protein
STRINGBra023515.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-164myb domain protein 16